| | |
|
a | |
 |
acemd |
|
|
acemd.acemd |
|
|
acemd.charmm |
|
|
acemd.licensing |
|
|
acemd.minimizer |
|
|
acemd.protocols |
|
|
acemd.reporters |
|
|
acemd.restraints |
|
|
acemd.utils |
|
|
acemd.versionwarnings |
|
| | |
|
h | |
|
htmd |
|
|
htmd.adaptive |
|
|
htmd.adaptive.adaptive |
|
|
htmd.adaptive.adaptivebandit |
|
|
htmd.adaptive.adaptivegoal |
|
|
htmd.adaptive.adaptivegoaleg |
|
|
htmd.adaptive.adaptiverun |
|
|
htmd.adaptive.util |
|
|
htmd.builder |
|
|
htmd.builder.amber |
|
|
htmd.builder.builder |
|
|
htmd.builder.charmm |
|
|
htmd.builder.ionize |
|
|
htmd.builder.loopmodeler |
|
|
htmd.builder.noncanonical |
|
|
htmd.builder.solvate |
|
|
htmd.clustering |
|
|
htmd.clustering.kcenters |
|
|
htmd.clustering.regular |
|
|
htmd.config |
|
|
htmd.decorators |
|
|
htmd.dock |
|
|
htmd.home |
|
|
htmd.kinetics |
|
|
htmd.latest |
|
|
htmd.license |
|
|
htmd.mdengine |
|
|
htmd.mdengine.acemd |
|
|
htmd.mdengine.acemd.acemd |
|
|
htmd.membranebuilder |
|
|
htmd.membranebuilder.build_membrane |
|
|
htmd.membranebuilder.globalminimization |
|
|
htmd.membranebuilder.ljfluid |
|
|
htmd.membranebuilder.ringpenetration |
|
|
htmd.metricdata |
|
|
htmd.metricdatagenerator |
|
|
htmd.model |
|
|
htmd.mutualinformation |
|
|
htmd.parallelprogress |
|
|
htmd.pathplanning |
|
|
htmd.projections |
|
|
htmd.projections.gwpca |
|
|
htmd.projections.kmeanstri |
|
|
htmd.projections.metric |
|
|
htmd.projections.tica |
|
|
htmd.protocols |
|
|
htmd.protocols.equilibration_v3 |
|
|
htmd.protocols.production_v6 |
|
|
htmd.session |
|
|
htmd.simlist |
|
|
htmd.ui |
|
|
htmd.units |
|
|
htmd.util |
|
|
htmd.versionwarnings |
|
| | |
|
j | |
|
jobqueues |
|
|
jobqueues.celeryfiles |
|
|
jobqueues.celeryfiles.celery |
|
|
jobqueues.celeryfiles.tasks |
|
|
jobqueues.celeryqueue |
|
|
jobqueues.config |
|
|
jobqueues.home |
|
|
jobqueues.localqueue |
|
|
jobqueues.lsfqueue |
|
|
jobqueues.pbsqueue |
|
|
jobqueues.playqueue |
|
|
jobqueues.sgequeue |
|
|
jobqueues.simqueue |
|
|
jobqueues.slurmqueue |
|
|
jobqueues.util |
|
| | |
|
m | |
|
moleculekit |
|
|
moleculekit.align |
|
|
moleculekit.atomselect |
|
|
moleculekit.atomselect.analyze |
|
|
moleculekit.atomselect.atomselect |
|
|
moleculekit.atomselect.languageparser |
|
|
moleculekit.bondguesser |
|
|
moleculekit.config |
|
|
moleculekit.dihedral |
|
|
moleculekit.distance |
|
|
moleculekit.fileformats |
|
|
moleculekit.fileformats.netcdf |
|
|
moleculekit.fileformats.utils |
|
|
moleculekit.interactions |
|
|
moleculekit.interactions.interactions |
|
|
moleculekit.molecule |
|
|
moleculekit.opm |
|
|
moleculekit.pdbx |
|
|
moleculekit.pdbx.reader |
|
|
moleculekit.pdbx.reader.BinaryCifReader |
|
|
moleculekit.pdbx.reader.PdbxContainers |
|
|
moleculekit.pdbx.reader.PdbxParser |
|
|
moleculekit.pdbx.reader.PdbxReader |
|
|
moleculekit.pdbx.writer |
|
|
moleculekit.pdbx.writer.PdbxWriter |
|
|
moleculekit.periodictable |
|
|
moleculekit.ply |
|
|
moleculekit.ply.lex |
|
|
moleculekit.ply.yacc |
|
|
moleculekit.projections |
|
|
moleculekit.projections.metriccoordinate |
|
|
moleculekit.projections.metricdihedral |
|
|
moleculekit.projections.metricdistance |
|
|
moleculekit.projections.metricfluctuation |
|
|
moleculekit.projections.metricgyration |
|
|
moleculekit.projections.metricplumed2 |
|
|
moleculekit.projections.metricrmsd |
|
|
moleculekit.projections.metricsasa |
|
|
moleculekit.projections.metricsecondarystructure |
|
|
moleculekit.projections.metricshell |
|
|
moleculekit.projections.metricsphericalcoordinate |
|
|
moleculekit.projections.metrictmscore |
|
|
moleculekit.projections.projection |
|
|
moleculekit.projections.util |
|
|
moleculekit.pymolgraphics |
|
|
moleculekit.rcsb |
|
|
moleculekit.rdkitintegration |
|
|
moleculekit.readers |
|
|
moleculekit.smallmol |
|
|
moleculekit.smallmol.smallmol |
|
|
moleculekit.smallmol.smallmolcdp |
|
|
moleculekit.smallmol.smallmollib |
|
|
moleculekit.smallmol.util |
|
|
moleculekit.tools |
|
|
moleculekit.tools.atomtyper |
|
|
moleculekit.tools.autosegment |
|
|
moleculekit.tools.crystalpacking |
|
|
moleculekit.tools.detect |
|
|
moleculekit.tools.docking |
|
|
moleculekit.tools.graphalignment |
|
|
moleculekit.tools.hhblitsprofile |
|
|
moleculekit.tools.modelling |
|
|
moleculekit.tools.moleculechecks |
|
|
moleculekit.tools.obabel_tools |
|
|
moleculekit.tools.obabel_tools.obabel_cli |
|
|
moleculekit.tools.preparation |
|
|
moleculekit.tools.preparation_customres |
|
|
moleculekit.tools.sequencestructuralalignment |
|
|
moleculekit.tools.voxeldescriptors |
|
|
moleculekit.unitcell |
|
|
moleculekit.util |
|
|
moleculekit.version |
|
|
moleculekit.viewer |
|
|
moleculekit.vmdgraphics |
|
|
moleculekit.vmdviewer |
|
|
moleculekit.writers |
|
| | |
|
p | |
|
playmolecule |
|
|
playmolecule.apps |
|
