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Installation
HTMD
Moleculekit
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PlayMolecule Installation
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PM-API
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Help
Internal Docs
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Section Navigation
htmd.adaptive package
htmd.adaptive.adaptive module
htmd.adaptive.adaptivebandit module
htmd.adaptive.adaptivegoal module
htmd.adaptive.adaptivegoaleg module
htmd.adaptive.adaptiverun module
htmd.adaptive.util module
htmd.builder package
htmd.builder.amber module
htmd.builder.builder module
htmd.builder.charmm module
htmd.builder.ionize module
htmd.builder.loopmodeler module
htmd.builder.noncanonical module
htmd.builder.solvate module
htmd.clustering package
htmd.clustering.kcenters module
htmd.clustering.regular module
htmd.mdengine package
htmd.mdengine.acemd package
htmd.mdengine.acemd.acemd module
htmd.membranebuilder package
htmd.membranebuilder.build_membrane module
htmd.membranebuilder.globalminimization module
htmd.membranebuilder.ljfluid module
htmd.membranebuilder.pdbreporter module
htmd.membranebuilder.ringpenetration module
htmd.membranebuilder.simulate_openmm module
htmd.molecule package
htmd.molecule.molecule module
htmd.molecule.util module
htmd.projections package
htmd.projections.gwpca module
htmd.projections.kmeanstri module
htmd.projections.metric module
htmd.projections.metriccoordinate module
htmd.projections.metricdihedral module
htmd.projections.metricdistance module
htmd.projections.metricfluctuation module
htmd.projections.metricplumed2 module
htmd.projections.metricrmsd module
htmd.projections.metricsasa module
htmd.projections.metricsecondarystructure module
htmd.projections.metricshell module
htmd.projections.metricsphericalcoordinate module
htmd.projections.metrictmscore module
htmd.projections.tica module
htmd.protocols package
htmd.protocols.equilibration_v3 module
htmd.protocols.production_v6 module
htmd.queues package
htmd.queues.localqueue module
htmd.queues.lsfqueue module
htmd.queues.pbsqueue module
htmd.queues.playqueue module
htmd.queues.simqueue module
htmd.queues.slurmqueue module
htmd.config module
htmd.decorators module
htmd.dock module
htmd.home module
htmd.kinetics module
htmd.latest module
htmd.license module
htmd.metricdata module
htmd.metricdatagenerator module
htmd.model module
htmd.mutualinformation module
htmd.parallelprogress module
htmd.pathplanning module
htmd.session module
htmd.simlist module
htmd.ui module
htmd.units module
htmd.util module
htmd.version module
htmd.versionwarnings module
htmd.license module
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