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Installation
HTMD
Moleculekit
ACEMD
PlayMolecule

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Installation
HTMD
Moleculekit
ACEMD
PlayMolecule

Twitter
GitHub
LinkedIn
Youtube
Medium

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htmd.adaptive package
htmd.builder package
htmd.clustering package
- htmd.clustering.kcenters module
- htmd.clustering.regular module
htmd.mdengine package
- htmd.mdengine.acemd package
  - htmd.mdengine.acemd.acemd module
htmd.membranebuilder package
htmd.projections package
htmd.protocols package
- htmd.protocols.equilibration_v3 module
- htmd.protocols.production_v6 module

htmd.config module
htmd.decorators module
htmd.dock module
htmd.home module
htmd.kinetics module
htmd.latest module
htmd.license module
htmd.metricdata module
htmd.metricdatagenerator module
htmd.model module
htmd.mutualinformation module
htmd.parallelprogress module
htmd.pathplanning module
htmd.session module
htmd.simlist module
htmd.ui module
htmd.units module
htmd.util module
htmd.versionwarnings module

HTMD
htmd.membranebuilder package
htmd.membran...

htmd.membranebuilder.globalminimization module#

htmd.membranebuilder.globalminimization.minimize(lipids, box, stepxy=0.5, steprot=50, contactthresh=2.6)#

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htmd.membranebuilder.build_membrane module

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htmd.membranebuilder.ljfluid module

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minimize()

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