moleculekit.pdbx.reader.PdbxParser module

PDBx/mmCIF dictionary and data file parser.

Acknowledgements:

The tokenizer used in this module is modeled after the clever parser design used in the PyMMLIB package.

PyMMLib Development Group Authors: Ethan Merritt: merritt@u.washington.ed & Jay Painter: jay.painter@gmail.com See: http://pymmlib.sourceforge.net/

exception moleculekit.pdbx.reader.PdbxParser.PdbxError

Bases: Exception

Class for catch general errors

class moleculekit.pdbx.reader.PdbxParser.PdbxReader(ifh)

Bases: object

PDBx reader for data files and dictionaries.

read(containerList)

Appends to the input list of definition and data containers.

class moleculekit.pdbx.reader.PdbxParser.PdbxWriter(ofh=<_io.TextIOWrapper name='<stdout>' mode='w' encoding='utf-8'>)

Bases: object

Write PDBx data files or dictionaries using the input container or container list.

write(containerList)

writeContainer(container)

exception moleculekit.pdbx.reader.PdbxParser.SyntaxError(lineNumber, text)

Bases: Exception

Class for catching syntax errors