moleculekit.atomselect.languageparser module#

moleculekit.atomselect.languageparser.p_compop(p)#

compopEQUAL: LESSER

GREATER

LESSEREQUAL

GREATEREQUAL

DOUBLEEQ

moleculekit.atomselect.languageparser.p_error(p)#

moleculekit.atomselect.languageparser.p_expression_backbonetype(p)#

expressionBACKBONETYPE PROTEINBACK: BACKBONETYPE NUCLEICBACK

BACKBONETYPE NORMAL

moleculekit.atomselect.languageparser.p_expression_comp(p)#: expression : expression compop expression %prec COMP

moleculekit.atomselect.languageparser.p_expression_exwithin(p)#: expression : EXWITHIN number OF expression

moleculekit.atomselect.languageparser.p_expression_grouped(p)#: expression : LPAREN expression RPAREN

moleculekit.atomselect.languageparser.p_expression_logop(p)#: expression : expression logop expression

moleculekit.atomselect.languageparser.p_expression_molprop(p)#

expressionmolprop_str_eq: molprop_int_eq

moleculekit.atomselect.languageparser.p_expression_numprop(p)#: expression : numprop

moleculekit.atomselect.languageparser.p_expression_sameas(p)#

expressionSAME FRAGMENT AS expression: SAME molprop_int AS expression

SAME molprop_str AS expression

SAME numprop_as_str AS expression

moleculekit.atomselect.languageparser.p_expression_unary_not(p)#: expression : NOT expression %prec UNOT

moleculekit.atomselect.languageparser.p_expression_within(p)#: expression : WITHIN number OF expression

moleculekit.atomselect.languageparser.p_float(p)#

floatFLOAT: QUOTEDFLOAT

moleculekit.atomselect.languageparser.p_float_unary_minus(p)#: float : MINUS float %prec UMINUS

moleculekit.atomselect.languageparser.p_func_number(p)#: number : func

moleculekit.atomselect.languageparser.p_integer(p)#

integerINTEGER: QUOTEDINT

moleculekit.atomselect.languageparser.p_integer_range(p)#: integer : integer TO integer

moleculekit.atomselect.languageparser.p_integer_unary_minus(p)#: integer : MINUS integer %prec UMINUS

moleculekit.atomselect.languageparser.p_literal_list(p)#

listlist string: list integer

string string

string integer

integer integer

integer string

moleculekit.atomselect.languageparser.p_logop(p)#

logopAND: OR

moleculekit.atomselect.languageparser.p_mathop(p)#

mathopPLUS: MINUS

TIMES

DIVIDE

moleculekit.atomselect.languageparser.p_molecule(p)#

expressionPROTEIN: NUCLEIC

ION

IONS

LIPID

LIPIDS

WATER

WATERS

BACKBONE

HYDROGEN

NOH

SIDECHAIN

moleculekit.atomselect.languageparser.p_molprop_int(p)#

molprop_intINDEX: SERIAL

RESID

RESIDUE

moleculekit.atomselect.languageparser.p_molprop_int_comp(p)#: expression : molprop_int compop expression %prec COMP

moleculekit.atomselect.languageparser.p_molprop_int_eq(p)#

molprop_int_eqmolprop_int integer: molprop_int list

moleculekit.atomselect.languageparser.p_molprop_int_modulo(p)#

molprop_int_eqmolprop_int MODULO integer DOUBLEEQ integer: molprop_int MODULO integer NOTEQ integer

moleculekit.atomselect.languageparser.p_molprop_string(p)#

molprop_strNAME: ELEMENT

RESNAME

ALTLOC

SEGNAME

SEGID

INSERTION

CHAIN

moleculekit.atomselect.languageparser.p_molprop_string_eq(p)#

molprop_str_eqmolprop_str string: molprop_str number

molprop_str list

moleculekit.atomselect.languageparser.p_num_funcs(p)#

funcABS LPAREN number RPAREN: SQR LPAREN number RPAREN

SQRT LPAREN number RPAREN

moleculekit.atomselect.languageparser.p_number(p)#

numberinteger: float

moleculekit.atomselect.languageparser.p_number_expression(p)#: expression : number

moleculekit.atomselect.languageparser.p_number_mathop(p)#: number : number mathop number

moleculekit.atomselect.languageparser.p_number_unary_minus(p)#: number : MINUS number %prec UMINUS

moleculekit.atomselect.languageparser.p_numprop_as_str(p)#

numprop_as_strCHARGE: MASS

OCCUPANCY

BETA

XCOOR

YCOOR

ZCOOR

moleculekit.atomselect.languageparser.p_numprop_eq_list(p)#: numprop : numprop list

moleculekit.atomselect.languageparser.p_numprop_eq_number(p)#: numprop : numprop number

moleculekit.atomselect.languageparser.p_numprop_mathop(p)#

numpropnumprop mathop number: numprop mathop numprop

moleculekit.atomselect.languageparser.p_numprop_number(p)#

numpropCHARGE: MASS

OCCUPANCY

BETA

XCOOR

YCOOR

ZCOOR

moleculekit.atomselect.languageparser.p_prop_funcs(p)#

funcABS LPAREN numprop RPAREN: SQR LPAREN numprop RPAREN

SQRT LPAREN numprop RPAREN

moleculekit.atomselect.languageparser.p_string(p)#

stringSTRING: QUOTEDSTRING

QUOTEDSTRINGSINGLE

moleculekit.atomselect.languageparser.t_FLOAT(t)#: (d*.d+)|(d+.d*)

moleculekit.atomselect.languageparser.t_INTEGER(t)#: d+(?![A-Za-z])

moleculekit.atomselect.languageparser.t_QUOTEDFLOAT(t)#: “(d*.d+)”|”(d+.d*)”|\'(\d*\.\d+)\'|'(d+.d*)'

moleculekit.atomselect.languageparser.t_QUOTEDINT(t)#: “(-?d+)”|'(-?d+)'

moleculekit.atomselect.languageparser.t_QUOTEDSTRING(t)#: “(?:[^”\]|\.)*”

moleculekit.atomselect.languageparser.t_QUOTEDSTRINGSINGLE(t)#: ‘(?:[^’\]|\.)*’

moleculekit.atomselect.languageparser.t_STRING(t)#: [a-zA-Z_0-9’]+

moleculekit.atomselect.languageparser.t_XCOOR(t)#: x

moleculekit.atomselect.languageparser.t_YCOOR(t)#: y

moleculekit.atomselect.languageparser.t_ZCOOR(t)#: z

moleculekit.atomselect.languageparser.t_error(t)#