API reference#

Auto-generated module documentation, grouped by topic. The RST stubs in this directory are produced by sphinx-apidoc at build time (make rst); they cover every public symbol in the htmd package.

Top-level entry points#

System building#

Membrane building#

Adaptive sampling#

Projections (HTMD-specific)#

Clustering#

MSM analysis#

Docking#

Utilities / internal#