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Section Navigation

  • htmd.ui module
  • htmd.simlist module
  • htmd.units module
  • htmd.util module
  • htmd.home module
  • htmd.config module
  • htmd.builder package
    • htmd.builder.amber module
    • htmd.builder.builder module
    • htmd.builder.charmm module
    • htmd.builder.ionize module
    • htmd.builder.loopmodeler module
    • htmd.builder.nonstandard module
    • htmd.builder.openmm module
    • htmd.builder.solvate module
  • htmd.builder.builder module
  • htmd.builder.charmm module
  • htmd.builder.amber module
  • htmd.builder.openmm module
  • htmd.builder.solvate module
  • htmd.builder.ionize module
  • htmd.builder.loopmodeler module
  • htmd.builder.nonstandard module
  • htmd.membranebuilder package
    • htmd.membranebuilder.build_membrane module
    • htmd.membranebuilder.globalminimization module
    • htmd.membranebuilder.ljfluid module
    • htmd.membranebuilder.ringpenetration module
  • htmd.membranebuilder.build_membrane module
  • htmd.membranebuilder.globalminimization module
  • htmd.membranebuilder.ljfluid module
  • htmd.membranebuilder.ringpenetration module
  • htmd.adaptive package
    • htmd.adaptive.adaptive module
    • htmd.adaptive.adaptivebandit module
    • htmd.adaptive.adaptivegoal module
    • htmd.adaptive.adaptivegoaleg module
    • htmd.adaptive.adaptiverun module
    • htmd.adaptive.util module
  • htmd.adaptive.adaptive module
  • htmd.adaptive.adaptiverun module
  • htmd.adaptive.adaptivegoal module
  • htmd.adaptive.adaptivegoaleg module
  • htmd.adaptive.adaptivebandit module
  • htmd.adaptive.util module
  • htmd.projections package
    • htmd.projections.gwpca module
    • htmd.projections.kmeanstri module
    • htmd.projections.metric module
    • htmd.projections.tica module
  • htmd.projections.metric module
  • htmd.projections.tica module
  • htmd.projections.gwpca module
  • htmd.projections.kmeanstri module
  • htmd.clustering package
    • htmd.clustering.kcenters module
    • htmd.clustering.regular module
  • htmd.clustering.kcenters module
  • htmd.clustering.regular module
  • htmd.metricdata module
  • htmd.metricdatagenerator module
  • htmd.model module
  • htmd.kinetics module
  • htmd.mutualinformation module
  • htmd.pathplanning module
  • htmd.dock module
  • htmd.decorators module
  • htmd.latest module
  • htmd.license module
  • htmd.parallelprogress module
  • htmd.session module
  • htmd.versionwarnings module
  • htmd package
    • htmd.adaptive package
      • htmd.adaptive.adaptive module
      • htmd.adaptive.adaptivebandit module
      • htmd.adaptive.adaptivegoal module
      • htmd.adaptive.adaptivegoaleg module
      • htmd.adaptive.adaptiverun module
      • htmd.adaptive.util module
    • htmd.builder package
      • htmd.builder.amber module
      • htmd.builder.builder module
      • htmd.builder.charmm module
      • htmd.builder.ionize module
      • htmd.builder.loopmodeler module
      • htmd.builder.nonstandard module
      • htmd.builder.openmm module
      • htmd.builder.solvate module
    • htmd.clustering package
      • htmd.clustering.kcenters module
      • htmd.clustering.regular module
    • htmd.membranebuilder package
      • htmd.membranebuilder.build_membrane module
      • htmd.membranebuilder.globalminimization module
      • htmd.membranebuilder.ljfluid module
      • htmd.membranebuilder.ringpenetration module
    • htmd.projections package
      • htmd.projections.gwpca module
      • htmd.projections.kmeanstri module
      • htmd.projections.metric module
      • htmd.projections.tica module
    • htmd.config module
    • htmd.decorators module
    • htmd.dock module
    • htmd.home module
    • htmd.kinetics module
    • htmd.latest module
    • htmd.license module
    • htmd.metricdata module
    • htmd.metricdatagenerator module
    • htmd.model module
    • htmd.mutualinformation module
    • htmd.parallelprogress module
    • htmd.pathplanning module
    • htmd.session module
    • htmd.simlist module
    • htmd.ui module
    • htmd.units module
    • htmd.util module
    • htmd.versionwarnings module
  • API reference
  • htmd.clustering package

htmd.clustering package#

Submodules#

  • htmd.clustering.kcenters module
    • KCenter
      • KCenter.cluster_centers_
      • KCenter.centerFrames
      • KCenter.labels_
      • KCenter.clusterSize
      • KCenter.distance
      • KCenter.fit()
      • KCenter.set_fit_request()
  • htmd.clustering.regular module
    • RegCluster
      • RegCluster.labels_
      • RegCluster.clusterSize
      • RegCluster.cluster_centers_
      • RegCluster.fit()
      • RegCluster.set_fit_request()

Module contents#

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htmd.projections.tica module

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htmd.clustering.kcenters module
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