Tutorials ========= The tutorials are divided in a set of sections, each containing several guides into several functionalities of HTMD: * The first section focuses on teaching the basics of HTMD, ideal for those starting with the software * The second section introduces the HTMD tools available to prepare and build systems for MD simulations * The third section explains how to setup and run MD simulations using HTMD * The fourth section is about analysis of MD simulations using Markov state models * The fifth section showcases some advanced uses of HTMD * The sixth section contains examples on how to use useful tools included in HTMD * The last section is a changelog of the modifications to HTMD along versions Contents: .. toctree:: :maxdepth: 2 Introduction to HTMD Building with HTMD Simulations in HTMD Analysis in HTMD Tools Changelog