Python Module Index

a | h
 
a
acecloud
    acecloud.client
    acecloud.cloud
    acecloud.exception
    acecloud.instancetypes
    acecloud.job
    acecloud.joblist
    acecloud.requesttype
    acecloud.status
 
h
htmd
    htmd.adaptive
    htmd.adaptive.adaptive
    htmd.adaptive.adaptivegoal
    htmd.adaptive.adaptivegoaleg
    htmd.adaptive.adaptiverun
    htmd.apps
    htmd.apps.acemd
    htmd.apps.pmemd
    htmd.builder
    htmd.builder.amber
    htmd.builder.builder
    htmd.builder.charmm
    htmd.builder.ionize
    htmd.builder.loopmodeler
    htmd.builder.preparation
    htmd.builder.preparationdata
    htmd.builder.solvate
    htmd.clustering
    htmd.clustering.kcenters
    htmd.clustering.regular
    htmd.config
    htmd.decorators
    htmd.dock
    htmd.ffevaluation
    htmd.ffevaluation.ffevaluate
    htmd.ffevaluation.test_ffevaluate
    htmd.home
    htmd.kinetics
    htmd.kineticshmm
    htmd.latest
    htmd.membranebuilder
    htmd.membranebuilder.build_membrane
    htmd.membranebuilder.globalminimization
    htmd.membranebuilder.ljfluid
    htmd.membranebuilder.pdbreporter
    htmd.membranebuilder.ringpenetration
    htmd.membranebuilder.simulate_openmm
    htmd.metricdata
    htmd.model
    htmd.modelhmm
    htmd.molecule
    htmd.molecule.crystalpacking
    htmd.molecule.graphalignment
    htmd.molecule.hhblitsprofile
    htmd.molecule.molecule
    htmd.molecule.pdbx
    htmd.molecule.pdbx.reader
    htmd.molecule.pdbx.reader.PdbxContainers
    htmd.molecule.pdbx.reader.PdbxParser
    htmd.molecule.pdbx.reader.PdbxReader
    htmd.molecule.pdbx.tests
    htmd.molecule.pdbx.tests.PdbxReaderTests
    htmd.molecule.pdbx.tests.PdbxReadWriteTests
    htmd.molecule.pdbx.tests.PdbxWriterTests
    htmd.molecule.pdbx.writer
    htmd.molecule.pdbx.writer.PdbxWriter
    htmd.molecule.pka
    htmd.molecule.readers
    htmd.molecule.support
    htmd.molecule.util
    htmd.molecule.vdw
    htmd.molecule.vmdparser
    htmd.molecule.voxeldescriptors
    htmd.molecule.wrap
    htmd.molecule.writers
    htmd.mutualinformation
    htmd.numbautil
    htmd.parallelprogress
    htmd.parameterization
    htmd.parameterization.cli
    htmd.parameterization.detect
    htmd.parameterization.dihedral
    htmd.parameterization.esp
    htmd.parameterization.fftype
    htmd.parameterization.parameterset
    htmd.parameterization.readers
    htmd.parameterization.test
    htmd.parameterization.util
    htmd.parameterization.writers
    htmd.pathplanning
    htmd.projections
    htmd.projections.gwpca
    htmd.projections.kmeanstri
    htmd.projections.metric
    htmd.projections.metriccoordinate
    htmd.projections.metricdihedral
    htmd.projections.metricdistance
    htmd.projections.metricfluctuation
    htmd.projections.metricnull
    htmd.projections.metricplumed2
    htmd.projections.metricrmsd
    htmd.projections.metricsasa
    htmd.projections.metricsecondarystructure
    htmd.projections.metricshell
    htmd.projections.metricsphericalcoordinate
    htmd.projections.metrictmscore
    htmd.projections.projection
    htmd.projections.tica
    htmd.projections.util
    htmd.protocols
    htmd.protocols.equilibration_v1
    htmd.protocols.equilibration_v2
    htmd.protocols.oldprotocolinterface
    htmd.protocols.pmemdequilibration
    htmd.protocols.pmemdproduction
    htmd.protocols.production_v1
    htmd.protocols.production_v2
    htmd.protocols.production_v3
    htmd.protocols.production_v4
    htmd.protocols.production_v5
    htmd.protocols.production_v6
    htmd.qm
    htmd.qm.base
    htmd.qm.fake
    htmd.qm.gaussian
    htmd.qm.psi4
    htmd.qm.test
    htmd.queues
    htmd.queues.acecloudqueue
    htmd.queues.localqueue
    htmd.queues.lsfqueue
    htmd.queues.pbsqueue
    htmd.queues.simqueue
    htmd.queues.slurmqueue
    htmd.rotationmatrix
    htmd.session
    htmd.simlist
    htmd.smallmol
    htmd.smallmol.molvstautomer
    htmd.smallmol.smallmol
    htmd.smallmol.tautomers
    htmd.smallmol.util
    htmd.ui
    htmd.units
    htmd.util
    htmd.version
    htmd.vmdgraphics
    htmd.vmdviewer