module, ref, molseg=None, refseg=None, maxalignments=10, nalignfragment=1)

Aligns two structures by their longests sequences alignment

  • mol (Molecule object) – The Molecule we want to align
  • ref (Molecule object) – The reference Molecule to which we want to align
  • molseg (str) – The segment of mol we want to align
  • refseg (str) – The segment of ref we want to align to
  • maxalignments (int) – The maximum number of alignments we want to produce
  • nalignfragment (int) – The number of fragments used for the alignment.

mols – A list of Molecules each containing a different alignment.

Return type: