# moleculekit.tools.sequencestructuralalignment module¶

moleculekit.tools.sequencestructuralalignment.sequenceStructureAlignment(mol, ref, molseg=None, refseg=None, maxalignments=10, nalignfragment=1)

Aligns two structures by their longests sequences alignment

Parameters: mol (Molecule object) – The Molecule we want to align ref (Molecule object) – The reference Molecule to which we want to align molseg (str) – The segment of mol we want to align refseg (str) – The segment of ref we want to align to maxalignments (int) – The maximum number of alignments we want to produce nalignfragment (int) – The number of fragments used for the alignment. mols – A list of Molecules each containing a different alignment. list